So I took a risk and tried again, this time just inserting the BDMV and Certificate folders as opposed to their parent folder. It appears to be working; it states 100% complete, but it has not finishing the process. I am unsure what this means:
I 22:59:25 ImgBurn Version 2.5.5.0 started!
I 22:59:25 Microsoft Windows 7 Professional x64 Edition (6.1, Build 7600)
I 22:59:25 Total Physical Memory: 4,193,460 KB - Available: 2,048,180 KB
I 22:59:25 Initialising SPTI...
I 22:59:25 Searching for SCSI / ATAPI devices...
I 22:59:25 -> Drive 1 - Info: HL-DT-ST BD-RE BH14NS40 1.00 (E:) (ATA)
I 22:59:25 -> Drive 2 - Info: PIONEER DVD-RW DVR-219L 1.01 (D:) (ATA)
I 22:59:25 Found 1 DVD±RW/RAM and 1 BD-RE!
I 23:01:16 Operation Started!
I 23:01:16 Building Image Tree...
I 23:01:16 Calculating Totals...
I 23:01:16 Preparing Image...
I 23:01:16 Contents: 11 Files, 14 Folders
I 23:01:16 Content Type: BD Video
I 23:01:16 Data Type: MODE1/2048
I 23:01:16 File System(s): UDF (2.50)
I 23:01:16 Volume Label: [Not Configured]
I 23:01:16 Size: 20,840,274,360 bytes
I 23:01:16 Sectors: 10,175,924
I 23:01:16 Image Size: 20,841,299,968 bytes
I 23:01:16 Image Sectors: 10,176,416
I 23:01:16 Operation Successfully Completed! - Duration: 00:00:00
I 23:02:33 Operation Started!
I 23:02:33 Building Image Tree...
I 23:02:33 Calculating Totals...
I 23:02:33 Preparing Image...
I 23:02:33 Contents: 11 Files, 14 Folders
I 23:02:33 Content Type: BD Video
I 23:02:33 Data Type: MODE1/2048
I 23:02:33 File System(s): UDF (2.50)
I 23:02:33 Volume Label: Win Win (2011) 1080p
I 23:02:33 Size: 20,840,274,360 bytes
I 23:02:33 Sectors: 10,175,924
I 23:02:33 Image Size: 20,841,299,968 bytes
I 23:02:33 Image Sectors: 10,176,416
I 23:02:37 Operation Successfully Completed! - Duration: 00:00:04
I 23:02:39 Operation Started!
I 23:02:39 Source File: -==/\/[bUILD IMAGE]\/\==-
I 23:02:39 Source File Sectors: 10,176,416 (MODE1/2048)
I 23:02:39 Source File Size: 20,841,299,968 bytes
I 23:02:39 Source File Volume Identifier: Win Win (2011) 1080p
I 23:02:39 Source File Volume Set Identifier: 40C5B850009B4734
I 23:02:39 Source File Application Identifier: ImgBurn v2.5.5.0
I 23:02:39 Source File Implementation Identifier: ImgBurn
I 23:02:39 Source File File System(s): UDF (2.50)
I 23:02:39 Destination Device: [4:0:0] HL-DT-ST BD-RE BH14NS40 1.00 (E:) (ATA)
I 23:02:39 Destination Media Type: BD-R (Disc ID: PHILIP-R04-000) (Speeds: 4x, 6x, 8x)
I 23:02:39 Destination Media Sectors: 12,219,392
I 23:02:39 Write Mode: BD
I 23:02:39 Write Type: DAO
I 23:02:39 Write Speed: 4x
I 23:02:39 BD-R Verify Not Required: Yes
I 23:02:39 Link Size: Auto
I 23:02:39 Lock Volume: Yes
I 23:02:39 Test Mode: No
I 23:02:39 OPC: No
I 23:02:39 BURN-Proof: Enabled
I 23:02:39 Write Speed Successfully Set! - Effective: 17,984 KB/s (4x)
I 23:02:51 Filling Buffer... (40 MB)
I 23:02:52 Writing LeadIn...
I 23:02:52 Writing Session 1 of 1... (1 Track, LBA: 0 - 10176415)
I 23:02:52 Writing Track 1 of 1... (MODE1/2048, LBA: 0 - 10176415)
W 23:03:59 Waiting for buffers to recover... (LBA: 537152)
W 23:04:18 Waiting for hard disk activity to reach threshold level...
I 23:04:28 Writing Sectors...
W 23:04:42 Waiting for buffers to recover... (LBA: 599712)
W 23:04:51 Waiting for hard disk activity to reach threshold level...
I 23:04:52 Writing Sectors...
I 23:23:08 Synchronising Cache...
I 23:23:09 Closing Track...
I 23:23:10 Finalising Disc...
I 23:23:26 Exporting Graph Data...
I 23:23:26 Graph Data File: C:\Users\Homebot\AppData\Roaming\ImgBurn\Graph Data Files\HL-DT-ST_BD-RE_BH14NS40_1.00_TUESDAY-JUNE-05-2012_11-02_PM_PHILIP-R04-000_4x.ibg
I 23:23:26 Export Successfully Completed!
I 23:23:26 Operation Successfully Completed! - Duration: 00:20:46
I 23:23:26 Average Write Rate: 16,737 KB/s (3.7x) - Maximum Write Rate: 18,251 KB/s (4.1x)
I 23:23:26 Cycling Tray before Verify...
W 23:23:34 Waiting for device to become ready...
W 23:25:55 Device Not Ready - Incompatible Medium Installed
W 23:25:55 Retrying (1 of 3)...
I 23:25:55 Cycling Tray before Verify...
W 23:26:00 Waiting for device to become ready...
W 23:28:21 Retry Failed - Reason: Incompatible Medium Installed
W 23:28:22 Retrying (2 of 3)...
I 23:28:22 Cycling Tray before Verify...
W 23:28:26 Waiting for device to become ready...
I hope there isn't a problem. I will test it and hope its just a bug